Resources for Practical Sections:
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BioInformatics Tools: |
Datasets for the practical sections
| Public and Private Databases: Practical I: Public databases Datasets to be extracted from public databases Practical II: RNA Virus Database Practical III: SATuRN BioMart Sequence datasets: Brazil subtype B, Brazil subtype C. Annotation: spreadsheet in CSV format Practical III: SATuRN database Datasets were already loaded in the database, no datasets needed.
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Bioinformatics Tools:
Practical I: Virus genotyping tools Use the Example sequences for your favority virus (HIV, HCV, HBV, HTLV-1) Practical II: HIV Quality Tool HIV Sequence I HIV Sequence II HIV Sequence III HIV intra-lab sequences Practical III: Counting Mutations and BlastAlign Counting epitopes alignment A I Counting epitopes alignmnet A II Counting epitopes alignment B I Counting epitopes alignment B II Practical IV: BlastAlign BlastAlign sequences I BlastAlign sequences II Practical V: BushMan Use the mytest and other reports to get a feeling from the system. Electropherogram example (may take long to upload 2.3 Mb) |
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