Developed by:
Marco Salemi and Tulio de Oliveira, Rega Institute, Belgium.
version 1.0, 13/02/2002.
GDE for Linux menu download:
Contents: HCV Sequence datasets, HCV Sequence databases,
Bioinformatics software, References and Online resources
HCV Sequence datasets
1. Reference sequence :
Hepatitis C virus, complete genome , Accession: NC_004102
Total Bases Sequenced: 9413 bp (bp).
Genome picture:
Hepatitis
C viruses genome picture at University of Leicester, U.K.
Hepatitis
C virus, complete genome at NCBI
2. Genetic variants dataset:
FASTA file , file details ( 27 complete genomes)
3. Dataset for phylogenetic analysis:
complete genome - FASTA file , file details ( 27 complete genomes)
4. Reference papers for phylogenetic analysis:
Salemi,
M., and VanDamme, AM.
Phylogenetic analysis of HCV complete genomes.
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Sequence Databases for local blast
and Xylem access:
1. Genbank database (strains, date, where, size)
HCVDB at EBI/France.
HCV sequence server
- great resource for HCV sequence data (Japan)
Bioinformatics Software:
A large number of software had been integrated, list of the software
The software need to be installed in your system following the instructions. [PDF
file]
Online Resources:
Sequence Databases:
HCV Sequence database,
EBI/France.
Viral Genome
resource at NCBI 
Taxonomy:
International Committee
on Taxonomy of Viruses
HCV
Taxonomy report NCBI
Alignments search and repositories:
HCV sequence server
- great resource for HCV sequence data (Japan)
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