Hepatitis C Virus (HCV) Blast Search

Complete Genbank search, numbering positioning and fast subtyping with HCV genotype reference dataset.

Enter sequence below in FASTA format


Or load it from disk

Choose the Option Below:

Search the Complete HCV Genbank database

Search the HCV Genotype Reference database

Search the NC_004102 HCV reference Sequence

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Developed by:

Tulio de Oliveira, Chris Rajah*, Chris Seebregts* and Sharon Cassol at the Molecular Virology and Bioinformatics Unit, Africa Centre at Nelson R Mandela School of Medicine and the Research Information Systems Division, South African Medical Research Council (MRC)*.
Choose program to use and database to search:

Database

The query sequence is filtered for low complexity regions by default.
Filter Low complexity Mask for lookup table only

Expect    Matrix Perform ungapped alignment

Query Genetic Codes (blastx only)

Other advanced options:     

Graphical Overview    Alignment view
Descriptions    Alignments



Page last updated 25 July 2008 by Tulio de Oliveira.