BioAfrica - Bioinformatics and Molecular Evolution Books

Bioinformatics and Molecular Evolutionary Books:

Molecular Evolution

Bioinformatics System

Linux/Unix System Administration

Linux/Unix Commands Tutorials.

Molecular Evolution:

The Phylogenetic Handbook : A Practical Approach to DNA and Protein Phylogeny by Marco Salemi (Editor), Anne-Mieke Vandamme (Editor) The Phylogenetic Handbook is a broad introduction to the theory and practice of nucleotide and amino acid phylogenetic analysis. As an unique feature of this book, each chapter contains an extensive practical section, in which step-by-step exercises on real data sets introduce the most widely used phylogeny software including CLUSTAL, PHYLIP, PAUP*, DAMBE, TREE-PUZZLE, TREECON, SplitsTree, TreeView, SimPlot, and BOOTSCANNING.	Inferring Phylogenies by Joseph Felsenstein The long waiting phylogenetic book from the creator of Phylip programs.
Molecular Evolution: A Phylogenetic Approach by Roderic D. M. Page, Edward C. Holmes Approaches the study of molecular evolution with the phylogenetic tree as a central metaphor, allowing students and professionals to see both the relevance of molecular data and the significance evolutionary theory has for molecular studies. Contains chapters on the function and evolution of genes, measuring genetic change, inferring molecular phylogeny, models of molecular evolution, and applications of molecular phylogenetics. For advanced students taking courses in molecular evolution/phylogenetic reconstruction.	Molecular Evolution and Phylogenetics by Masatoshi Nei, Sudhir Kumar This book presents the statistical methods that are useful in the study of molecular evolution and illustrates how to use them in actual data analysis. It is appropriate for graduate students and researchers (assuming a basic knowledge of evolution, moecular biology, and elementary statistics), allowing many investigators to incorporate refined statistical analysis of large-scale data in their own work.
Molecular Evolution by Wen-Hsiung Li This text provides a synthesis of the developments in molecular evolution during the last two decades. It describes the dynamics of evolutionary change at the molecular level, the driving forces behind the evolutionary process, novel evolutionary phenomena revealed by molecular data, the effects of various molecular mechanisms on the structure of genes and genomes, and the methodology involved in the statistical analysis of molecular data from an evolutionary perspective. Intended for advanced students and researchers in molecular evolution or molecular biology; some knowledge of molecular biology, genetics, and mathematics is required.	Computational and Evolutionary Analysis of Hiv Molecular Sequences by Allen G. Rodrigo (Editor), Gerald H., Jr Learn (Editor) Computational and Evolutionary Analysis of HIV Molecular Sequences is for all researchers interested in HIV research, even those who only have a nodding acquaintance with computational biology (or those who are familiar with some, but not all, aspects of the field). HIV research is unusual in that it brings together scientists from a wide range of disciplines: clinicians, pathologists, immunologists, epidemiologists, virologists, computational biologists, structural biologists, evolutionary...

Bioinformatics System:

Beginning Perl for Bioinformatics -- With its highly developed capacity to detect patterns in data, Perl has become the language of choice for biological data analysis. This book shows the nonprogramming biologist how to use Perl and how to apply the language to bioinformatics. Each chapter focuses on solving a particular problem or class of problems, so biologists and programmers finish the book with a solid understanding of Perl basics, a collection of programs for tasks such as parsing BLAST and GenBank, and the skills to tackle more advanced bioinformatics programming.

Developing Bioinformatics Computer Skills
By Cynthia Gibas, Per Jambeck

Developing Bioinformatics Computer Skills will help biologists, researchers, and students develop a structured approach to biological data and the computer tools they'll need to analyze it. The book covers the Unix file system, building tools and databases for bioinformatics, computational approaches to biological problems, an introduction to Perl for bioinformatics, data mining, data visualization, and tips for tailoring data analysis software to individual research needs.

Bioinformatics Computing
by Bryan P. Bergeron

The complete, practical guide to bioinformatics for molecular biologists and life scientists Gives an overview of bioinformatics from a computer science perspective. Makes the computer science aspects of bioinformatics more understandable for life scientists. Presents a ready reference for current and future online and standalone tools.

Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins, Second Edition
by Andreas D. Baxevanis (Editor), B. F. Francis Ouellette, andr Baxevanis

Presents fourteen chapters on tools and databases used in bioinformatics, loosely defined as the intersection of molecular and computational biology. With the goal of helping the reader design and implement a successful sequence analysis strategy, topics covered include: using software and Internet resources, submitting DNA sequences to databases, information retrieval from databases, phylogenetic analysis, a database for genome information called ACeDB, and practical aspects of multiple sequence alignment

Linux/Unix System Administration:

Running Linux, 4th Edition
By Matt Welsh, Matthias Kalle Dalheimer, Terry Dawson, Lar Kaufman

Delves into installation, configuring the windowing system, system administration, and networking. A solid foundation text for any Linux user, the book also includes additional resources for dealing with special requirements imposed by hardware, advanced applications, and emerging technologies.

Linux in a Nutshell, 3rd Edition
By Ellen Siever, Stephen Spainhour, Jessica P. Hekman, Stephen Figgins

This complete reference covers all user, programming, administration, and networking commands, with options, for common Linux distributions. It also documents a wide range of GNU tools. New material in the third edition includes common configuration tasks for the GNOME and KDE desktops and the fvwm2 window manager, the dpkgDebian package manager, expanded coverage of the rpm Red Hat package manager, and many new commands.

Linux Network Administrator's Guide, 2nd Edition
By Olaf Kirch, Terry Dawson

Fully updated, this impressive, comprehensive introduction to networking on Linux now covers firewalls, including the use of ipchains and iptables (netfilter), masquerading, and accounting. Other new topics include Novell (NCP/IPX) support and INN (news administration). Original material on serial connections, UUCP, routing and DNS, mail and News, SLIP and PPP, NFS, and NIS has been thoroughly updated

Unix Power Tools, 3rd Edition
By Shelley Powers, Jerry Peek, Tim O'Reilly, Mike Loukides, et. al.

The latest edition of this best-selling favorite is loaded with vital information on Linux, Darwin, and BSD. Unix Power Tools 3rd Edition now offers more coverage of bash, zsh, and other new shells, along with discussions about modern utilities and applications. Several sections focus on security and Internet access. There is a new chapter on access to Unix from Windows, and expanded coverage of software installation and packaging, as well as basic information on Perl and Python.