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Oxford HCV Subtyping Tool Citation


This tool has two publications available. Please cite both papers.

A Standardized Framework for Accurate, High-throughput Genotyping of Recombinant and Non-recombinant Viral Sequences. Alcantara LCJ, Cassol S, Libin P, Deforche K, Pybus OG, Van Ranst M, Galvao-Castro B, Vandamme A-M, and de Oliveira T. (2009) Nucleic Acids Research, 1-9, doi: 10.1093/nar/gkp455     

An Automated Genotyping System for Analysis of HIV-1 and other Microbial Sequences.
de Oliveira T, Deforche K, Cassol S, Salminem M, Paraskevis D, Seebregts C, Snoeck J, van Rensburg EJ, Wensing AMJ, van de Vijver DA, Boucher CA, Camacho R, and Vandamme A-M. (2005) Bioinfomatics, 21 (19), 3797-3800.




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Developed by: Tulio de Oliveira, Marco Salemi, Oliver Pybus, Sabrina Almeida,  Andrew Rambaut.

Developed in collaboration between the Africa Centre for Health and Population Studies bioinformatics group, UKZN, South Africa,  the Evolutionary Biology Group at University of Oxford, UK. Department of Pathology, Immunology & Laboratory Medicine, University of Florida, Gainesville, USA. Biotechnology department, Universidade Federal do Rio Grande do Sul (UFRGS), Brazil.

Funded by the Marie Curie Fellowship, Royal Society and Wellcome Trus, UK.

Suggestions or problems on the program please contact:  Dr Tulio de Oliveira.