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Oxford HCV Automated Subtyping Tool (Version 2.0)

This tool uses phylogenetic methods to identify the subtype of query sequences. The recombination analysis is done only with HCV Genotypes. A version that uses HCV subtypes in the recombination is available here

Note for batch analysis: The Oxford HCV subtype tool accepts up to 1000 sequences at a time.

Enter here your input data as FASTA format.

Choose a mirror to subtype your sequences or choose another virus to genotype.

Submit sequences
How to cite
HCV Tutorials
HCV Decision Trees
HCV Subtyping Process
HCV Example Sequences
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Developed by: Tulio de Oliveira, Marco Salemi, Oliver Pybus, Sabrina Almeida,  Andrew Rambaut.

Developed in collaboration between the Africa Centre for Health and Population Studies bioinformatics group, UKZN, South Africa,  the Evolutionary Biology Group at University of Oxford, UK. Department of Pathology, Immunology & Laboratory Medicine, University of Florida, Gainesville, USA. Biotechnology department, Universidade Federal do Rio Grande do Sul (UFRGS), Brazil.

Funded by the Marie Curie Fellowship, Royal Society and Wellcome Trus, UK.

In order to help in the responce to the Zika worldwide emergency, we have produced a sutyping tool to identify Dengue, Zika and Chikungunya viruses species and genotypes.

Suggestions or problems on the program please contact:  Dr Tulio de Oliveira.