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REGA HPV (Human Papillomavirus) Automated Subtyping Tool (Version 1.0)

This tool uses phylogenetic methods to identify the subtype of query sequences.

Note for batch analysis: The REGA subtype tool accepts up to 1000 sequences at a time.

Please note: The HPV subtyping is based only in the L1 region of the genome.

Enter here your input data as FASTA format.

Choose a mirror to subtype your sequences or choose another virus to genotype.

Submit sequences
How to cite
HPV Tutorials
HPV Decision Trees
HPV Subtyping Process
HPV Example Sequences
Contact us

Developed by: Annabel Rector, Marc Van Ranst, Andrew Rambaut, and Tulio de Oliveira.

Developed in collaboration between the Africa Centre for Health and Population Studies bioinformatics group, UKZN, South Africa and the the REGA Institute at the Katholieke Universiteit Leuven, Belgium.

Funded by the Marie Curie Fellowship, Royal Society and Wellcome Trus, UK.

In order to help in the responce to the Zika worldwide emergency, we have produced a sutyping tool to identify Dengue, Zika and Chikungunya viruses species and genotypes.

Suggestions or problems on the program please contact:  Dr Tulio de Oliveira.