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Oxford HBV Automated Genotyping Tool (Version 1.0)


This tool is designed to use phylogenetic methods in order to identify the genotype of a specific sequence.  The sequence is analysed for recombination using bootscanning methods.

Note for batch analysis: The Oxford HBV genotype tool accepts up to 1000 sequences at a time.

Warning: In our alignments, the P protein starts at position 2307. An example of the reference sequence is found here. The numbering position follows the Refseq NC_003997 in the GenBank.

Enter here your input data as FASTA format.

Choose a mirror to genotype your sequences




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Developed by: Tulio de Oliveira, Sharon Cassol, Emmanouil Magiorkinis, Dimitrios Paraskevis and Andrew Rambaut

Developed in cooperation with the Evolutionary Biology Group at University of Oxford, UK, the HIV-1 Pathogenesis and Immunotherapeutics Program at University of Pretoria, South Africa and National Retrovirus Reference Center, Department of Hygiene and Epidemiology, Athens University Medical School, Greece.

Funded by the Marie Curie Fellowship, Wellcome Trust and Royal Society, UK.

Suggestions or problems on the program please contact:  Dr Tulio de Oliveira.