The virus genotyping tools are a
collaborative project lead by Tulio de Oliveira at the University of Oxford, UK.
The project involves many Universities and Institutes. These include
members of the following groups:
The
Zoology Department, University of Oxford, U.K.
- Tulio de Oliveira
- Oliver Pybus
Institute
of Evolutionary Biology, University of Edinburgh, U.K.
- Andrew Rambaut
REGA
Institute, Katholieke Universiteit Leuven, Belgium
- Ana Abecasis
- Koen Deforche
- Annabel Rector
- Joke Snoeck
- Sonia Van Dooren
- Marc Van Ranst
- Anne-Mieke Vandamme
Virology
Laboratory, Hospital Egas
Moniz, Portugal
- Ricardo Camacho
HIV-1
Immune Pathogenesis and Therapeutics
Research Program, University of Pretoria, South Africa.
- Sharon Cassol
- Taryn Page
Laboratorio Avancado de Saude Publica
(LASP) CPqGM/FIOCRUZ, Brazil
- Luiz Carlos Alcantara
- Bernardo Galvao-Castro
- Ramon Moreau
Department
of Pathology, Immunology &
Laboratory Medicine, University of Florida, Gainesville, USA
- Marco Salemi
Universidade
Federal do Rio Grande do Sul
(UFRGS), Brazil
- Sabrina Matos Almeida
HIV
Drug Resistance Database, Stanford University, USA.
- Robert Shafer
- Soo-Yon Rhee
Department
of Hygiene and Epidemiology, Athens University Medical School, Greece.
- Emmanouil Magiorkinis
- Dimitrios
Paraskevis
The following groups also mirror the
virus genotyping tools:
- Prof.
Robert Shafer, Stanford University, USA.
- The
Evolution
group, Zoology department of the University of Hong Kong, China.
- Prof.
Yutaka Takebe, AIDS Research Center in the National
Institute of Infectious
Diseases, Japan.
Publications: (How to cite the tools?)
These
tools are not yet published. In the mean time please cite the following
paper:
An
Automated Genotyping System for Analysis of
HIV-1 and other Microbial Sequences.
T. de Oliveira,K. Deforche, S. Cassol, M. Salminem, D. Paraskevis, C.
Seebregts, J. Snoeck, E. J. van Rensburg ,A.
M.
J. Wensing, D.A. van de Vijver, C. A.
Boucher , R. Camacho , and A-M Vandamme.
Bioinfomatics 2005; 21
(19), 3797-3800.
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