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REGA HIV-1 Automated Subtying Tool (Version 2.0)

News:  The 14th International Bioinformatics Workshop on Virus Evolution and Molecular Epidemiology at SANBI, the University of the Western Cape, Cape Town, South Africa. 1 - 5 September 2008.


This tool uses phylogenetic methods to identify the subtype of query sequences.  The sequence is also analysed for recombination using bootscanning.


Enter here your input data as FASTA format.




Submit sequences
 How to cite
 Tutorials
 Decision Trees
 Subtyping Process
 Example Sequences
 Contact us
Developed by: Tulio de Oliveira, Koen Deforche, Sharon Cassol, Andrew Rambaut and Anne-Mieke Vandamme.

Developed in cooperation with the Evolutionary Biology Group at University of Oxford, UK., the HIV-1 Pathogenesis and Immunotherapeutics Program at University of Pretoria, South Africa, and the REGA Institute at the Katholieke Universiteit Leuven, Belgium.
Funded by the Marie Curie Fellowship, Flanders Bilateral Cooperation Program and the Wellcome Trust (grant # 061238 ).

For questions, suggestions or problems please contact:  Dr. Tulio de Oliveira.