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BioAfrica HHV8 Automated Subtying Tool (Version 2.0)

News:  The 14th International Bioinformatics Workshop on Virus Evolution and Molecular Epidemiology at SANBI, the University of the Western Cape, Cape Town, South Africa. 1 - 5 September 2008.


 This tool uses phylogenetic methods to identify the subtype of query sequences.

Please note: The HHV8 subtyping is based only in the K1 region of the genome.

Enter here your input data as FASTA format.




Submit sequences
 How to cite
 Tutorials
 Decision Trees
 Subtyping Process
 Example Sequences
 Contact us
Developed by: Taryn Page, Sharon Cassol, Andrew Rambaut and Tulio de Oliveira

Developed in cooperation with the Evolutionary Biology Group at University of Oxford, UK, HIV-1 Pathogenesis and Immunotherapeutics Program at University of Pretoria, South Africa.

Funded by the Marie Curie Fellowship,  Wellcome Trust and the Royal Society, UK.

Suggestions or problems on the program please contact:  Dr Tulio de Oliveira.