Bioafrica home page Laboratory for Clinical and Evolutionary Virology home page

LASP HTLV-1 Automated Subtying Tool (Version 2.0)

News:  The 14th International Bioinformatics Workshop on Virus Evolution and Molecular Epidemiology at SANBI, the University of the Western Cape, Cape Town, South Africa. 1 - 5 September 2008.


 This tool uses phylogenetic methods to identify the subtype of query sequences.

Please note: The HTLV-1 subtyping is based only in the LTR region of the genome.

Enter here your input data as FASTA format.




Submit sequences
 How to cite
 Tutorials
 Decision Trees
 Subtyping Process
 Example Sequences
 Contact us
Developed by: Luiz Carlos J Alcantara,  Sonia Van Dooren, Anne-Mieke Vandamme, Bernardo Galvao-Castro, Tulio de Oliveira.

Developed in cooperation with the Evolutionary Biology Group at University of Oxford, UK, the REGA Institute at the Katholieke Universiteit Leuven, Belgium and the Laboratorio Avancado de Saude Publica (LASP) CPqGM/FIOCRUZ, Brazil.

Funded by the Marie Curie Fellowship, Flanders Bilateral Cooperation Program, PN-DST/AIDS (Ministry of Health) and FAPESB, Brazil.

For HTLV-1 subtyping questions please contact Dr Luiz Alcantara,
Suggestions or problems on the program please contact:  Dr Tulio de Oliveira.